C-MORE Publications

Newly Published

2016

558. Shilova, I., J. Robidart, E. DeLong, J. Zehr, 2016. Genetic diversity affects the daily transcriptional oscillations of marine microbial populations. PLoS ONE 11(1): e0146706

560. Levine, N.M., Toole, D.A., Neeley, A., Bates, N.R., Doney, S.C., Dacey, J.W.H. 2016. Revising upper-ocean sulfur dynamics near Bermuda: new lessons from 3 years of concentration and rate measurements. Environmental Chemistry 3:302-313

561. Kavanaugh, M.T., Boersma, K., Close, S., Ganio, L., Hooven., L., Lachenbruch, B. 2015. Advancing Toward Professorship in Biology, Ecology and Earth System Sciences. In: Mavriplis, C., Sabila, P., Heller, S. FORWARD to Professorship in STEM: Inclusive Strategies That Work. pp -–-. Elsevier

562. Saunders, M., Brown, C., Foley, M.E., Febria,C., Albright,R., Mehling, M., Kavanaugh, M.T., Burfeind, D. 2015. Human impacts on connectivity in marine and freshwater ecosystems assessed using network measures. Marine and Freshwater Research 67:277-290

563. Moran, M.A., Kujawinski, E.B., Stubbins, A., Fatland, R., Aluwihare, L.I., Buchan, A., Crump, B.C., Dorrestein, P.C., Dyhrman, S.T., Hess, N., Longnecker, K., Medeiros, P.M., Niggemann, J., Obernosterer, I., Repeta, D.J., Waldbauer, J. 2016. Deciphering Ocean Carbon in a Changing World . Proc. Natl. Acad. Sci. 113:3143-3151

564. Alexander, H., Rouco, M., Haley, S.T., Wilson, S. T., Karl, D.M., Dyhrman, S.T. 2015. Functional group specific traits drive shift in ecosytem state in the oligotrophic ocean. Proc. Natl. Acad. Sci. 112:E5972-E5979

565. Diaz, J.M., Haley, S.T., Longo, A.F., Ingall, E.D., Björkman, K.M., Karl, D. M., Dyhrman, S. T. 2016. Polyphosphate content and dynamics at Station ALOHA, North Pacific Subtropical Gyre . Limnol. Oceanogr. 61:227-239

566. Dyhrman, S.T. 2016. Nutrients and Their Acquisition: Phosphorus Physiology in Microalgae. In: Borowitzka, M.A., Beardall, J., Raven, J.A. The Physiology of Microalgae. pp 155–183. Springer

567. Pereira N., Shilova, I.N., Zehr J.P. 2016. Molecular markers define progressing stages of phosphorus limitation in the nitrogen‐fixing cyanobacterium, Crocosphaera. Journal of Phycology 52:274-282

568. Cornejo-Castillo, F.M., Cabello, A.M., Salazar, G., Sánchez-Baracaldom, P., Lima-Mendez, G., Hingamp, P., Alberti, A., Sunagawa, S., Bork, P., De Vargas, C., Raes, J., Bowler, C., Wincker, P., Zehr, J.P., Gasol, J.P., Massana, R., Acinas S.G. 2016. Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton. Nature Communications 7:1-9

569. Rees, A.P., Turk-Kubo, K.A., Al-Moosawi, L., Alliouane, S., Gazeau, F., Hogan, M.E., Zehr, J.P. 2016. Ocean acidification impacts on nitrogen fixation in the coastal western Mediterranean Sea. Estuarine, Coastal and Shelf Science in press:in press-in press

570. Farnelid, H.M., Turk-Kubo, K.A., Zehr, J.P. 2016. Identification of Associations between Bacterioplankton and Photosynthetic Picoeukaryotes in Coastal Waters. Frontiers in Microbiology 7:1-16

571. Turk-Kubo, K.A., Frank, I.E., Hogan, M.E., Desnues, A., Bonnet, S., Zehr, J.P. 2015. Diazotroph community succession during the VAHINE mesocosm experiment (New Caledonia lagoon). Biogeosciences 12:7435-7452

572. Zehr, J.P. 2015. How single cells work together. Science 349:1163-1164

573. Hilton, J.A., Satinsky, B.M., Doherty, M., Zielinski,B., Zehr, J.P. 2015. Metatranscriptomics of N2-fixing cyanobacteria in the Amazon River plume. ISME Journal 9:1557-1569

574. Bombar, D., Taylor, C.D., Wilson,S.T., Robidart,J.C., Rabines, A., Turk-Kubo, K.A., Kemp, J.N., Karl, D.M., Zehr, J.P. 2015. Measurements of nitrogen fixation in the oligotrophic North Pacific Subtropical Gyre using a free-drifting submersible incubation device. Journal of Plankton Research 37:727-739

575. Bonnet, S., Berthelot, H., Turk-Kubo, K., Fawcett, S., Rahav E., l’Helguen, S., Berman-Frank, I. 2015. Dynamics of N2 fixation and fate of diazotroph-derived nitrogen in a low nutrient low chlorophyll ecosystem: results from the VAHINE mesocosm experiment (New Caledonia). Biogeosciences Discussions 12:19579-19626

576. Bonnet, S., Rodier, M., Turk‐Kubo, K.A., Germineaud, C., Menkes, C., Ganachaud, A., Cravatte, S., Raimbault, P., Campbell, E., Quéroué, F., Sarthou, G., Desnues, A., Maes, C., Eldin, G. 2015. Contrasted geographical distribution of N2 fixation rates and nifH phylotypes in the Coral and Solomon Seas (southwestern Pacific) during austral winter conditions. Global Biogeochemical Cycles 29:1874-1892

577. Bang, M., Chisholm, P. submitted. Rivers of Sunlight: How the Sun moves water around the Earth. Blue Sky Press, Scholastic. 42 pp

578. Lea-Smith D., Biller S., Davey M., Cotton C., Perez-Sepulveda B., Turchyn A., Scanlan D., Smith A., Chisholm S., Howe C. 2015. Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle. Proc. Natl. Acad. Sci. 112(44):13591-13596

579. Biller S., Coe A., Martin-Cuadrado A., and Chisholm S. 2015. Draft genome sequence of Alteromonas macleodii strain MIT1002, isolated from an enrichment culture of the marine cyanobacterium Prochlorococcus. Genome Announcements 3(4):e00967-15

580. Coe, A., Ghizzoni, J., LeGault, K., Biller, S., Roggensack, S., Chisholm, S. 2016. Survival of Prochlorococcus in extended darkness. Limnol. Oceanogr. In press:x-x

581. Berube P., Coe A., Roggensack E., Chisholm S. 2016. Temporal dynamics of Prochlorococcus cells with the potential for nitrate assimilation in the subtropical Atlantic and Pacific oceans. Limnol. Oceanogr. 61(2):482-495

582. Casey, J.R., Falkowski, P.G., Karl, D.M. 2015. Substrate selection for heterotrophic bacterial growth in the sea. Marine Chemistry 177:349-356

583. Keffer, J.L., Sabanayagam, C.R., Lee, M.E. , DeLong, E.F., Hahn, M.W, Maresca, J.A. 2015. 2015. Identifying rhodopsin-containing cells using TIRF microscopy. Appl. Environ. Micrbiol. 81:3442-3450

584. Sosa, O., Gifford, S.M. , Repeta, D., DeLong, E.F. 2015. Dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures. ISME J. 9:2725-2739

585. Fontanez, K.M., Eppley, J.E., Samo, T.J., Karl, D.M. , DeLong, E.F. 6. Microbes and metabolic pathways on sinking particles in the North Pacific Subtropical Gyre. Frontiers in Microbiology 6:469-.

586. 4. Bryant, J.A., Aylward, F.O., Eppley, J.M., Karl, D.M., Church, M.J., DeLong, E.F. 2015. Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre. . ISME J. doi:10.1038/ismej.2015.221:.-.

587. 6. Mende D.R., Aylward F.O., Eppley J.M., Nielsen T.N., DeLong E.F. 2016. Improved environmental genomes via integration of metagenomic and single-cell assemblies. . Front Microbiol. 7:143-.

588. Bryant J.A., Clemente, T., Viviani, D.A., Fong, A.A., Thomas, K.A., Kemp, P., Karl D.M., White, DeLong E.F. 2016. Diversity and Activity of Communities inhabiting plastic debris in the North Pacific Gyre. mSystems 1:e00024-16-.

589. Nigro, O.D., Steward, G.F. 2015. Differential specificity of selective culture media for enumeration of pathogenic vibrios: advantages and limitations of multi-plating methods. Journal of Microbiological Methods 111:24-30

590. Miranda, J.A., Culley, A.I., Schvarcz, C.R., Steward, G.F. 2016. RNA viruses as major contributors to Antarctic virioplankton. Environmental Microbiology DOI: 10.1111/1462-2920.13291:1-14

591. Fitzsimmons, J., Boyle, E., Jenkins, W. 2014. Distal transport of dissolved hydrothermal iron in the deep South Pacific Ocean. Proc. Nat. Acad. Sci. 111:16654-16661

592. Fitzsimmons, J., Bundy, R., al-Subiai, S., Barbeau, K., Boyle, E. 2015. The composition of dissolved iron in the dusty surface ocean: an exploration using size-fractionated iron-binding ligands. Mar. Chem. 173:125-135

593. Hayes, C., Fitzsimmons, J., Boyle, E., McGee, D., Anderson, R., Weisend, R, Morton, P. 2015. Thorium isotopes tracing the iron cycle at the Hawaii Ocean Time-series Station ALOHA. Geochim. Cosmochim. Acta 169:1-16

594. Fitzsimmons, J., Hayes, C., al-Subiai, S., Zhang, R., Morton, P., Weisend, R., Ascani, F., Boyle, E. 2015. Daily to decadal variability of size-fractionated iron and iron-binding ligands at the Hawaii Ocean Time-series Station ALOHA. Geochim. Cosmochim. Acta 171:303-324

595. Wilson, S.T., Barone, B., Ascani, F., Bidigare, R.R., Church, M.J., del Valle, D.A., Dyhrman, S. T., Ferrón, S., Fitzsimmons, J.N., Juranek, L.W., Kolber, Z.S., Letelier, R. M., Martínez-Garcia, S., Nicholson, D., Richards, K. J., Rii, Y.M., Rouco, M., Viviani, D.A., White, A.E., Zehr, J.P., Karl D.M. 2015. Short-term variability in euphotic zone biogeochemistry and primary productivity at Station ALOHA: A case study of summer 2012. Global Biogeochemical Cycles 29:1-30

596. Yelton, A., Acinas, S., Sunagawa, S., Bork, P., Pedrós-Alió, C., Chisholm, S. 2016. Global genetic capacity for mixotrophy in marine picocyanobacteria. ISME Journal In Press:x-x

597. Biller, S., Coe, A., Chisholm, S. 2016. Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus. ISME Journal In Press:x-x

598. 4. Ferron, S., del Valle, D.A., Björkman, K.M., Quay, P.D., Church, M.J., Karl, D.M. 2016. Application of membrane inlet mass spectrometry to measure aquatic gross primary production by the 18O in vitro method. Limnology and Oceanography: Methods XX:XX-XX

599. Rii, Y.M., S. Duhamel, R.R. Bidigare, D.M. Karl, D.J. Repeta, M.J. Church 2015. Diversity and productivity of photosynthetic picoeukaryotes in biogeochemically distinct regions of the South East Pacific Ocean. Limnology and Oceanography doi: 10.1002/lno.10255:XX-XX

600. Björkman, K.M., M.J. Church, J.K. Doggett, D.M. Karl 2015. Differential assimilation of inorganic carbon and leucine by Prochlorococcus and non-pigmented bacteria in the oligotrophic North Pacific Subtropical Gyre. Frontiers in Marine Science doi: 10.3389/fmicb.2015.01401:XX-XX

601. Viviani, D.A., D.M. Karl, M.J. Church 2015. Photosynthetic production of dissolved and particulate organic carbon in the North Pacific Subtropical Gyre. Frontiers in Marine Science doi:10.3389/fmars.2015.00073:XX-XX

602. White, A.E., R.M. Letelier, A.L. Whitmire, B. Barone, R.R. Bidigare, M.J. Church, and D.M. Karl 2015. Phenology of particle size distributions and primary productivity in the North Pacific Subtropical gyre. Journal Geophysical Research - Oceans 120:7381-7399

603. Saito, Mak A., Matthew R. McIlvin, Dawn M. Moran, Tyler J. Goepfert, Giacomo R. DiTullio, Anton F. Post, and Carl H. Lamborg. 2014. Multiple Nutrient Stresses at Intersecting Pacific Ocean Biomes Detected by Protein Biomarkers. . Science 345:1173-1177

604. Saito, M. A., Dorsk, A., Post, A. F., McIlvin, M., Rappé, M. S., DiTullio, G., & Moran, D. 2015. Needles in the Blue Sea: Sub‐Species Specificity in Targeted Protein Biomarker Analyses Within the Vast Oceanic Microbial Metaproteome. PROTEOMICS 15:3521-3531

605. Mackey, K. R., Post, A. F., McIlvin, M. R., Cutter, G. A., John, S. G., & Saito, M. A. 2015. Divergent responses of Atlantic coastal and oceanic Synechococcus to iron limitation.. Proceedings of the National Academy of Sciences 112:9944-9949

606. Laufkötter, C., Vogt, M., Gruber, N., Aumont, O., Bopp, L., Doney, S.C., Dunne, J.P., Hauck, J., John, J.G., Lima, I.D., Seferian, R., C. Völker, C. 2016. Projected decreases in future marine export production: the role of the carbon flux through the upper ocean ecosystem. Biogeosciences 13:4023-4047

607. Barnypok 1985. polbTyvZksDTqiOUX. LgxuRzJooTwvqoWzzr. jasiypOuGZMTwub pp

2015

Astorga-Eló, Marcia , Salvador Ramírez-Flandes, Edward F DeLong, and Osvaldo Ulloa 2015. Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone.. ISME J. 9(5): 1264-1267.

Aylward, F.O., Eppley, J.M., Smith,J.M., Chavez, F.P., Scholin,C.A. & DeLong, E.F. 2015. Microbial Community Transcriptional Networks are Conserved in Three Domains at Ocean Basin Scales. Proc. Natl. Acad. Sci. U.S.A. 112(17) 5443-5448

Bagby, S., Chisholm, S.W 2015. Response of Prochlorococcus to varying CO2:O2 ratios. The ISME Journal 9(10):2232-45

Bench, S., I. Frank, J. Robidart, J. Zehr, 2015. Two subpopulations of Crocosphaera watsonii have distinct distributions in the North and South Pacific. Environmental Microbiology doi: 10.1111/1462-2920.13180

Biller, S.J., Berube, P.M., Lindell, D., Chisholm, S.W. 2015. Prochlorococcus: the structure and function of collective diversity. Nature Reviews Microbiology 13:13-27

Boyd, P.W., Lennartz, S.T., D.M. Glover, D.M., Doney, S.C. 2015. Biological ramifications of climate-change-mediated oceanic multi-stressors. Nature Climate Change 5:71-79

Collins, J.R., Edwards, B.R., Thamatrakoln, K., Ossolinski, J.E., DiTullio, G.R., Bidle, K.D., Doney, S.C., B.A.S. Van Mooy, B.A.S. 2015. The multiple fates of sinking particles in the North Atlantic Ocean. Global Biogeochemical Cycles 29:1471-1494

Cooper, S.D., H.M. Page, S.W. Wiseman, K. Klose, D.M. Bennett, T. Even, S. Sadro, C.E. Nelson, and T.L. Dudley 2015. Physicochemical and biological responses of streams to wildfire severity in riparian zones. Freshwater Biology 60: 2600-2619. doi:10.1111/fwb.12523

Doney, S. (committee member), National Research Council 2015. Climate Intervention: Carbon Dioxide Removal and Reliable Sequestratio. National Academies Press.

Doney, S. (committee member), National Research Council 2015. Climate Intervention: Reflecting Sunlight to Cool Earth. National Academies Press.

Nicholson, D.P., Wilson, S.T., Doney, S.C., Karl, D.M. 2015. Quantifying subtropical North Pacific gyre mixed layer primary productivity from Seaglider observations of diel oxygen cycles. Geophysical Research Letters 42:4032-4039

Paulot, F., Jacob, D.J., Johnson, M.T., Bell, T.G., Baker, A.R., Keene, W.C., Lima, I.D., Doney, S.C., Stock, C.A. 2015. Global oceanic emission of ammonia: Constraints from seawater and atmospheric observations. Global Biogeochemical Cycles 29:1165-1178

von Dassow, P., John, U., Ogata, H., Probert, I., Bendif, E.M., Kegel, J.U., Audic, S., Wincker, P., Da Silva, C., Claverie, J.-M., Doney, S., Glover, D.M., Flores, D.M., Herrera, Y., Lescot, M., Garet-Delmas, M.-J., de Vargas, C. 2015. Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton. The ISME Journal 9, 1365-1377

E.K. Wear, C.A. Carlson, A.K. James, M.A. Brzezinski, L.A. Windecker and C.E. Nelson 2015. Synchronous shifts in dissolved organic carbon bioavailability and bacterial community responses over the course of an upwelling-drivenphytoplankton bloom. Limnology & Oceanography 2015:1-32

2014

Baker, L.J., Kemp, P.F. 2014. Exploring bacteria-diatom associations using single-cell whole genome amplification. Aquatic Microbial Ecology 72:73-88

Bang, M., Chisholm, S.W. 2014. Buried Sunlight: How fossil fuels have changed the Earth. Blue Sky Press, Scholastic. 48 pp

Bates, N.R., Astor, Y.M., Church, M.J., Currie, K., Dore, J.E., González-Dávila, M., Lorenzoni, L., Muller-Karger, F., Olafsson, J., Santana-Casiano, J.M. 2014. A time-series view of changing ocean chemistry due to ocean uptake of anthropogenic CO2 and ocean acidification. Oceanography 27:126-141

Becker, J.W., Berube, P.M., Follett, C.L., Waterbury, J.B, Chisholm, S.W., DeLong, E. F., Repeta, D.J. 2014. Closely related phytoplankton species produce similar suites of dissolved organic matter. Frontiers in Microbiological Chemistry 5:111

Berube, P.M., Biller, S.J., Kent, A.G., Berta-Thompson, J.W., Roggensack, S.E., Roache-Johnson, K.H., Ackerman, M., Moore, L.R., Meisel, J.D., Sher, D., Thompson, L.R., Campbell, L., Martiny, A.C., Chisholm, S.W. 2014. Physiology and evolution of nitrate acquisition in Prochlorococcus. The ISME Journal Advance Online:doi:10.1038/ismej.2014.211-

Biddle, J.F., Jungbluth, S.P., Lever, M.A., Rappé, M.S. 2014. Life in the oceanic crust. In: Kallmeyer, J., Wagner, D. Microbial Life of the Deep Biosphere. pp 1-20. De Gruyter

Bidigare, R.R., Buttler, F.R., Christensen, S.J., Barone, B., Karl, D.M., Wilson, S.T. 2014. Evaluation of the utility of xanthophylls cycle pigment dynamics for assessing upper ocean mixing processes at Station ALOHA. Journal of Plankton Research 36:1423-1433

Biller, S.J., Berube, P.M., Berta-Thompson, J.W., Kelly, L., Roggensack, S.E., Awad, L., Roache-Johnson, K.H., Ding, H., Giovannoni, S.J., Rocap, G., Moore, L.R., Chisholm, S.W. 2014. Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Scientific Data 1:140034-

Biller, S.J., Schubotz, F., Roggensack, S.E., Thompson, A.W., Summons, R.E., Chisholm, S.W. 2014. Bacterial vesicles in marine ecosystems. Science 343:183-186

Bombar, D., Heller, P., Sanchez-Baracaldo, P., Carter, B. J., Zehr, J. P. 2014. Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria. ISME Journal 8:2530-2542

Böttjer, D., Jungbluth, S.P., Boiteau, R., Burkhardt, B., de Leo, F., Bruno, B.C. 2014. Career choices in marine and environmental sciences: navigating a sea of options. Oceanography 27:201-207

Böttjer, D., Karl, D.M., Letelier, R.M., Viviani, D.A., Church, M.J. 2014. Experimental assessment of diazotroph responses to elevated seawater pCO2 in the North Pacific Subtropical Gyre. Global Biogeochemical Cycles 28:601-616

Boyle, E.A., Lee, J.-M., Echegoyen, Y., Noble, A., Moos, S., Carrasco, G., Zhao, N., Kayser, R., Zhang, J., Gamo, T., Obata, H., Norisuye, K. 2014. Anthropogenic lead emissions in the ocean: The evolving global experiment. Oceanography 27:69-75

Bruno, B.C., Wren, J.L.K. 2014. Climate change, sea level rise, and ocean acidification. The Earth Scientist 30(1):9-11

Burkhardt, B., Watkins-Brandt, K.S., Defforey, D., Paytan, A., White, A.E. 2014. Remineralization of phytoplankton-derived organic matter by natural populations of heterotrophic bacteria. Marine Chemistry 163:1-9

Cameron Thrash J., Temperton B., Swan B.K., Landry Z.C., Woyke T., Delong E.F., Stepanauskas R., Giovannoni S.J. 2014. Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype. The ISME Journal 8:1440-1451

Carini, P. A.E. White, E.O. Campbell and S. Giovanonni 2014. Aerobic methanogenesis by phosphate-starved SAR11 chemoheterotrophic marine bacteria. Nature Communications 5:doi:10.1038-ncomms5346.

Collavino, M.M, Tripp, H. J., Frank, I. E., Vidoz, M. L., Calderoli, P. A., Donato, M., Zehr, J.P., Aguilar, O. M. 2014. nifH pyrosequencing reveals the potential for location-specific soil chemistry to influence N2-fixing community dynamics. Environmental Microbiology 16:3211-3223

Culley, A.I., Mueller, J.A., Belcaid, M., Wood-Charlson, E.M., Poisson, G., Steward, G.F. 2014. The characterization of RNA viruses in tropical seawater using targeted PCR and metagenomics. mBio 5:e01210-14-e01210-14

Dalsgaard, T., Stewart, F.J., Thamdrup, B., De Brabandere, L., Revsbech,N.P., Ulloa,O., Canfield, D.E., DeLong E.F. 2014. Oxygen at nanomolar levels reversibly suppresses process rates and gene expression of anammox and denitrification in the oxygen minimum zone off northern Chile. MBio 5:e01966-doi: 10.1128/mBio.01966-14

del Valle, D.A., Karl, D.M. 2014. Aerobic production of methane from dissolved water-column methylphosphonate and sinking particles in the North Pacific Subtropical Gyre. Aquatic Microbial Ecology 73:93-105

DeLong, E.F. 2014. Alien invasions and gut “island biogeography” . Cell 159:233-235

Doney, S., Rosenberg, A.A., Alexander, M., Chavez, F., Harvell, C.D., Hofmann, G., Orbach, M., Ruckelshaus, M. 2014. Ch. 24: Oceans and Marine Resources. In: Melillo, J.M., Richmond, T.C., Yohe, G.W., Eds. Climate Change Impacts in the United States: The Third National Climate Assessment. pp 557-578. U.S. Global Change Research Program

Doney, S.C., Karnauskas, K.B. 2014. Oceanography: Oxygen and climate dynamics. Nature Climate Change 4:862-863

Dore, J.E., Church, M.J., Karl, D.M., Sadler, D.W., Letelier, R.M. 2014. Paired windward and leeward biogeochemical time series reveal consistent surface ocean CO2 trends across the Hawaiian Ridge. Geophysical Research Letters 41:6459-6467

Duhamel, S., Björkman, K.M., Doggett, J.K., Karl, D.M. 2014. Microbial response to enhanced phosphorus cycling in the North Pacific Subtropical Gyre. Marine Ecology Progress Series 504:43-58

Durham, B. P., J. Grote, K. A. Whittaker, S. J. Bender, H. Luo, S. L. Grim, J. M. Brown, J. R. Casey, A. Dron, L. R. Florez-Leiva, A. Krupke, C. M. Luria, A. H. Mine, O. Nigro, S. Pather, A. Talarmin, E. K. Wear, T. S. Weber, J. M. Wilson, M. J. Church, E. F. DeLong, D. M. Karl, G. F. Steward, J. M. Eppley, N. C. Kyrpides, S. Schuster, and M. S. Rappé 2014. Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter possessing an unusually small genome. Standards in Genomic Sciences 9:632-645

Fiechter, J., Curchitser, E.N., Edwards, C.A., Chai, F., Goebel, N.L., Chavez, F.P. 2014. Air-sea CO2 fluxes in the California Current: Impacts of model resolution and coastal topography. Global Biogeochemical Cycles 28:371-385

Fiedler, J. W., McManus, M. A., Tomlinson, M. S., De Carlo, E. H., Pawlak, G. R., Steward, G. F., Nigro, O. D., Timmerman, R. E., Drupp, P. S., Wells, J. R., Ostrander, C. E. 2014. Real-time observations of the February 2010 Chile and March 2011 Japan tsunamis in Honolulu, Hawaii as recorded by the Pacific Islands Ocean Observing System. Oceanography 2:186-200

Fitzsimmons, J.N., Boyle, E.A. 2014. Assessment and comparison of Anopore and cross flow filtration methods for the determination of dissolved iron size fractionation into soluble and colloidal phases in seawater. Limnology and Oceanography: Methods 12: 244-261

Fitzsimmons, J., Boyle, E. 2014. Both soluble and colloidal iron phases control dissolved iron variability in the tropical North Atlantic Ocean. Geochimica et Cosmochimica Acta 125:539-550

Ganesh S., Parris D.J., DeLong E.F., Stewart F.J. 2014. Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone. The ISME Journal 8:187-211

Gilbert JA, Dick GJ, Jenkins B, Heidelberg J, Allen E, Mackey KR, DeLong EF. 2014. Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements. Stand Genomic Sci. 9:125-128

Goebel, N.L., Edwards, C.A., Follows, M.J., Zehr, J.P. 2014. Modeled diversity effects on microbial ecosystem functions of primary production, nutrient uptake, and remineralization. Ecology 95:153-163

Gradoville, M.R., A. E. White and R.M. Letelier 2014. Physiological effects of enhanced carbon dioxide on high density Crocosphaera cultures. PlosOne 9:doi:10.1371-/journal.pone.0110660

Gradoville, M.R., White, A.E., Böttjer, D., Church, M.J., Letelier, R.M. 2014. Diversity trumps acidification: No carbon dioxide enhancement of Trichodesmium community nitrogen or carbon fixation at Station ALOHA. Limnology and Oceanography 59:645-659

Heller, P., Tripp, H. J., Turk-Kubo, K., Zehr, J. P. 2014. ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank. Bioinformatics 30:2883-2890

Jungbluth, S.P., Lin, H.-T., Cowen, J.P., Glazer B.T., Rappé, M.S. 2014. Phylogenetic diversity of microorganisms in subseafloor crustal fluids from Holes 1025C and 1026B along the Juan de Fuca Ridge flank. Frontiers in Microbiology 5:doi:10.3389/fmicb.2014.00119.

Karl, D.M. 2014. Microbially mediated transformations of phosphorus in the sea: New views of an old cycle. Annual Reviews of Marine Science 6:279-337

Karl, D.M. 2014. Solar energy capture and transformation in the sea. Elementa doi:10.12952/journal.elementa.000021

Karl, D.M., Björkman, K.M. 2014. Dynamics of dissolved organic phosphorus. In: D. Hansell and C. Carlson Biogeochemistry of Marine Dissolved Organic Matter. pp 233-334. Elsevier

Karl, D.M., Schlesinger, W.H. (eds.) 2014. Biogeochemistry, 2nd edn., vol. 10 of Treatise on Geochemistry (Holland, H. D. and K. K. Turekian, Exec. Eds.). Elsevier. 649 pp

Karl, D. M. 2014. Roger Revelle Commemorative Lecture: The contemporary challenge of the sea: Science, society and sustainability. Oceanography 27:208-225

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White, A.E., Dyhrman, S. 2013. The marine phosphorus cycle. Frontiers in Microbiology 4:doi: 10.3389 -/fmicb.2013.00105

Wilson, S.T., del Valle, D.A., Robidart, J.C., Zehr, J.P. and Karl, D.M. 2013. Dissolved hydrogen and nitrogen fixation in the oligotrophic North Pacific Subtropical Gyre. Environmental Microbiology Reports 5:697-704

Wilson, S.T., Karl, D.M., 2013. A high-resolution insight into microbial biogeochemistry in the North Pacific Ocean. Current: The Journal of Marine Education 28(3):20-21

Wood-Charlson, E.M. 2013. Marine Symbioses: Metazoans and Microbes. In: Levin, S.A. Encyclopedia of Biodiverity, 2nd ed. pp 116-126. Academic Press: Waltham

Yeo, S. K., Eiler, A., Huggett, M., Rappé, M. S. 2013. Coastal bacterioplankton community dynamics in response to a natural disturbance.. PLoS ONE doi:10.1371/journal.pone.0056207.

2012

Apprill, A., Marlow, H.Q., Martindale, M.Q., Rappé, M.S. 2012. The specificity of associations between bacteria and the coral Pocillopora meandrina during early development. Applied and Environmental Microbiology 78:7467-7475

Bang, M., Chisholm, P. 2012. Ocean Sunlight: How Tiny Plants Feed the Seas. Scholastic, Inc. 48 pp

Björkman, K.M., Duhamel, S., Karl, D.M. 2012. Microbial group specific uptake kinetics of inorganic phosphate and adenosine-5’-triphosphate (ATP) in the North Pacific Subtropical Gyre. Frontiers in Microbiology 3:1-17

Blomquist, B.W., Fairall, C.W., Huebert, B.J., Wilson S.T. 2012. Direct measurement of the oceanic carbon monoxide flux by eddy correlation. Atmos. Meas. Tech. Discuss. 5:4089-4825

Boyle, E., John, S., Abouchami, W., Adkins, J., Echegoyen-Sanz, Y., Ellwood, M., Flegal, A., Fornace, K., Gallon, C., Galer, S., Gault-Ringold, M., Lacan, F., Radic, A., Rehkamper, M., Rouxel, O., Sohrin, Y., Stirling, C., Thompson, C., Vance, D., Xue, Z., Zhao, Y. 2012. GEOTRACES IC1 (BATS) Contamination-Prone Trace Element Isotopes Cd, Fe, Pb, Zn, Cu, Mo) Intercalibration. Limnology and Oceanography Methods 10:653-665

Bryant, J. A., Stewart, F. J., Eppley, J. M., Delong, E. F. 2012. Microbial community phylogenetic and trait diversity declines steeply with depth in a marine oxygen minimum zone. Ecology 93:1659-1673

Buitenhuis, E. T., Li, W. K. W., Vaulot, D., Lomas, M. W., Landry, M., Partensky, F., Karl, D. M., Ulloa, O., Campbell, L., Jacquet, S., Lantoine, F., Chavez, F., Macias, D., Gosselin, M., McManus, G. B. 2012. Picophytoplankton biomass distribution in the global ocean. Earth System Science Data 4:37-46

Cassman, N., Prieto-Davó, A., Walsh, K., Silva, G.G.Z., Angly, F., Akhter, S., Barott, K., Busch, J., McDole, T., Haggerty, J.M., Willner, D., Alarcón, G., Ulloa, O., DeLong, E.F., Dulith, B., Rohwer, F., Dinsdale, E. A. 2012. Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology 14:3043-3065

Cordero, O.X., Ventouras, L.A., Delong, E.F., Polz, M. 2012. Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations. Proceedings of the National Academy of Sciences USA 109:20059-20064

Danhorn, T., Young C.R., DeLong, E.F. 2012. Comparison of large-insert, small-insert, and pyrosequencing libraries for metagenomic analysis. The ISME Journal 6:2056-2066

DeLong, E.F. 2012. Microbial evolution in the wild. Science 336:422-424

del Valle, D.A., Kiene, R.P., Karl, D.M. 2012. Effect of visible light on dimethylsulfoniopropionate assimilation and conversion to dimethylsulfide in the North Pacific Subtropical Gyre. Aquatic Microbial Ecology 66:47-62

Ditchfield A.K., Wilson, S.T., Hart, M.C., Purdy, K.J., Green, D.H., Hatton, A.D. 2012. Identification of putative methylotrophic and hydrogenotrophic methanogens within sedimenting material and copepod faecal pellets. . Aquatic Microbial Ecology 67:151-160

Duhamel, S., Björkman, K.M., Karl, D.M. 2012. Light dependence of phosphorus uptake by microorganisms in the North and South Pacific subtropical gyres. Aquatic Microbial Ecology 67:225-238

Dyhrman, S.T., Haley, S.T. 2012. Arsenate resistance in the marine diazotroph Crocosphaera watsonii. Frontiers in Microbiology 2:214-doi:10.3389/fmicb.2011.00214

Dyhrman, S.T., Jenkins, B.D., Rynearson, T.A., Saito, M.A., Mercier, M.L. and others 2012. The Transcriptome and Proteome of the Diatom Thalassiosira pseudonana reveal a Diverse Phosphorus Stress Response. PLoS ONE 7:e3376-doi:10.1371/journal.pone.0033768

Fitzsimmons, J., Boyle, E. 2012. An intercalibration between the GEOTRACES GO-Flo and the MITESS/Vanes sampling systems for dissolved iron concentration analyses (and a closer look at adsorption effects). Limnology and Oceanography Methods 10:437-450

Friedrich, T., Timmermann, A., Abe-Ouchi, A., Bates, N.R., Chikamoto, M.O., Church, M.J., Dore, J.E., Gledhill, D.K., Gonzalez-D´avila, M., Heinemann, M., Ilyina, T., Jungclaus, J.H., McLeod, E., Mouchet, A., Santana-Casiano, J.M. 2012. Detecting regional anthropogenic trends in ocean acidification against natural variability. Nature Climate Change 2:167-171

Gibson, B.A., Bruno, B.C. 2012. The C-MORE Scholars Program: Motivations for an academic-year Research Experiences for Undergraduates program. Journal of College Science Teaching 41:12-18

Grote, J., Thrash, J. C., Huggett, M.J., Landry, Z.C., Carini, P., Giovannoni, S.J., Rappé, M.S. 2012. Streamlining and core genome conservation among highly divergent members of the SAR11 clade. mBio 3(5):e00252-12

Grote, J., Schott, T., Bruckner, C.G., Glockner, F.O., Jost, G., Teeling, H., Labrenz, M., Jürgens K. 2012. Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones. Proceedings of the National Academy of Sciences USA 109:506-510

Guidi, L., Calil, P.H.R., Duhamel, S., Björkman, K.M., Doney, S.C., Jackson, G.A., Li, B., Church, M.J., Tozzi, S., Kolber, Z.S., Richards, K.J., Fong, A.A., Letelier, R.M., Gorsky, G., Stemmann, L., Karl, D.M. 2012. Does eddy-eddy interaction control surface phytoplankton distribution and carbon export in the North Pacific Subtropical Gyre? J. Geophys. Res. Biogeosci. 117:G02024 -doi:10.1029/2012JG001984

Hsia, M.H., Bruno, B.C. 2012. Hands-on family science program stimulates interest in ocean science careers. Current: The Journal of Marine Education 28:16-25

Huggett, M. J., Hayakawa, D. H., Rappé, M. S. 2012. Genome sequence of strain HIMB624, a cultured representative from the OM43 clade of marine Betaproteobacteria. Standards in Genomic Sciences 6:doi:10.4056/sigs.2305090-.

Huggett, M.J., Rappé, M.S. 2012. Genome sequence of strain HIMB55, a novel marine gammaproteobacterium of the OM60/NOR5 clade. J. Bacteriology 194:2393-2394

Huggett, M.J., Rappé, M.S. 2012. Genome sequence of strain HIMB30, a novel member of the marine Gammaproteobacteria. J. Bacteriology 194:732-733

Hynes, A.M., Webb, E.A., Doney, S.C., Waterbury, J.B. 2012. Comparison of cultured Trichodesmium (Cyanophyceae) with species characterized from the field. J. Phycology 48:196-210

Juranek, L., Quay, P., Feely, R., Lockwood, D., Karl, D., Church, M. 2012. Biological production in the NE Pacific and its influence on air-sea CO2 flux: Evidence from dissolved oxygen isotopes and O2/Ar. J. Geophysical Research, Oceans 117:C05012

Kahng, S., Hochberg, E., Apprill, A., Wagner, D., Luck, D., Perez, D., Bidigare, R. 2012. Efficient light harvesting in deep-water, zooxanthellate corals. Marine Ecology Progress Series 455:65-77

Karl, D.M., Church, M.J., Dore, J.E., Letelier, R.M., Mahaffey, C. 2012. Predictable and efficient carbon sequestration in the North Pacific Ocean supported by symbiotic nitrogen fixation. Proceedings of the National Academy of Sciences USA 109:1842-1849

Levine, N.M., Varaljay, V.A., Toole, D.A., Dacey, J.W.H., Doney, S.C., Moran, M.A. 2012. Environmental, biochemical and genetic drivers of DMSP degradation and DMS production in the Sargasso Sea. Environmental Microbiology 14:1210-1223

Lomas, M., Moran, S., Casey, J., Bell, D., Tiahlo, M., Whitefield, J., Kelly, R., Mathis, J., Cokelet, E. 2012. Spatial and seasonal variability of primary production on the Eastern Bering Sea shelf. Deep Sea Research II 65-70:126-140

Luo, Y.-W., Ducklow, H.W., Friedrichs, M.A.M., Church, M.J., Karl, D.M., Doney, S.C. 2012. Interannual variability of primary production and dissolved organic nitrogen storage in the North Pacific Subtropical Gyre. , J. Geophysical Research Biogeosci. 117:G03019-doi:10.1029/2011JG001830

Luo, Y.-W., S.C. Doney, L.A. Anderson, M. Benavides, I. Berman-Frank, A. Bode, S. Bonnet, K.H. Boström, D. Böttjer, D.G. Capone, E.J. Carpenter, Y.L. Chen, M.J. Church, J.E. Dore, L.I. Falcón, A. Fernández, R.A. Foster, K. Furuya, F. Gómez, K. Gundersen, A.M. Hynes, D.M. Karl, S. Kitajima, R.J. Langlois, J. LaRoche, R.M. Letelier, E. Marañón, D.J. McGillicuddy Jr., P.H. Moisander, C.M. Moore, B. Mouriño-Carballido, M.R. Mulholland, J.A. Needoba, K.M. Orcutt, A.J. Poulton, E. Rahav, P. Raimbault, A.P. Rees, L. Riemann, T. Shiozaki, A. Subramaniam, T. Tyrrell, K.A. Turk-Kubo, M. Varela, T.A. Villareal, E.A. Webb, A.E. White, J. Wu, and J.P. Zehr, 2012: Database for diazotrophs in global ocean: abundances, biomass and nitrogen fixation rates. Earth Syst. Sci. Data, 4:47-73

Mackey, K., Buck, K., Casey, J., Cid, A., Lomas, M., Sohrin, Y., Paytan, A. 2012. Phytoplankton responses to atmospheric metal deposition in the coastal and open-ocean Sargasso Sea. Frontiers in Microbiology 3:1-15

Mahaffey, C., Bjorkman, K.M., Karl, D.M. 2012. Phytoplankton response to deep seawater nutrient addition in the North Pacific Subtropical Gyre. Marine Ecology Progress Series 460:13-34

McSorley, F.R., Wyatt, P., Martinez, A., DeLong, E.F., Hove-Jensen, B., Zechel, D.L. 2012. PhnY and PhnZ comprise a new oxidative pathway for enzymatic cleavage of a carbon-phosphorus bond. J. Am. Chem. Soc. 134:8364-8367

Mouw, C.B., Yoder, J.A., Doney, S.C. 2012. Impact of phytoplankton community size on a linked global ocean optical and ecosystem model. J. Marine Systems 89:61-75

Nicholson, D.P., Stanley, R.H.R., Barkan, E., Karl, D.M., Luz, B., Quay, P.D., Doney, S.C. 2012. Evaluating triple oxygen isotope estimates of gross primary production at the Hawaii Ocean Time-series and Bermuda Atlantic Time-series Study sites . J. Geophys. Res. Oceans 117:C05012-doi:10.1029/2010JC006856

Nigro, O.D., Culley, A.I., Steward, G.F. 2012. Complete genome sequence of bacteriophage VvAW1, which infects Vibrio vulnificus. Standards in Genomic Sciences 6:415-426

Noble, A.E., Lamborg, C.H., Ohnemus, D., Lam, P.J., Goepfert, T.J., Measures, C.I., Frame, C.H., Casciotti, K.L., DiTullio, G.R., Jennings, J., Saito, M.A. 2012. Basin-scale plumes of cobalt, iron, and manganese emanating from the Benguela-Angola front in the South Atlantic Ocean. Limnology and Oceanography 57:989-1010

Paerl, R. W., Tozzi, S., Kolber, Z., Zehr, J.P. 2012. Variation in Synechococcus sp. CC9311 narB mRNA abundance relative to changes in light, nitrogen growth conditions and nitrate assimilation. J Phycology 48:1028-1039

Paerl, R.W., Turk, K.A., Beinart, R., Chavez, F.P., Zehr, J.P. 2012. Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes at Monterey Bay determined by rbcL and narB quatitative PCR. Environmental Microbiology 14:580-593

Robidart, J.C, Preston, C.M., Paerl, R.W., Turk, K.A., Mosier, A.C., Francis, C.A., Scholin, C.A., Zehr, J.P. 2012. Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation. The ISME Journal 6:513-523

Robidart, J., Shilova, I.N., Zehr, J.P. 2012. ‘Omics’-enabled microbial sensors on ocean platforms. In: Tiquia-Arashiro, S.M. Molecular Biological Technologies for Ocean Sensing. pp 1-32. Humana Press, The University of Michigan-Dearborn

Saito, M.A. 2012. The rise of oxygen and aerobic biochemistry. Structure 20:1-2

Sanudo-Wilhelmy, S.A., Cutter, L.S., Duraxo, R., Smail, E.A., Gomez-Consarnau, L., Webb, E.A., Prokopenko, M.G., Berelson, W.M., Karl, D.M. 2012. Multiple B-vitamin depletion in large areas of the coastal ocean. Proceedings of the National Academy of Sciences USA 109:14041-14045

Steward, G.F., Culley, A.I., Mueller, J.A., Wood-Charlson, E.M., Belcaid, M., Poisson, G. 2012. Are we missing half of the viruses in the ocean? The ISME Journal 7:672-679.

Stewart, F. J., Dalsgaard, T., Young, C.R., Thamdrup, B., Revsbech, N.P., Ulloa, O., Canfield, D.E., DeLong, E.F. 2012. Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton. PLoSOne 7:e37118-.

Stewart, F.J., Ulloa, O., DeLong, E.F. 2012. Microbial metatranscriptomics in a permanent marine oxygen minimum zone. Environmental Microbiology 14:23-40

Thompson, A., Foster, R.A., Krupke, A., Carter, B.J., Vaulot, D., Kuypers, M.M.M., Zehr, J.P. 2012. Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science 337:1546-1550

Turk-Kubo, K.A., Achilles, K.M., Cote, T., Ochiai, M., Montoya, J. P., Zehr, J.P. 2012. Nitrogenase (nifH) gene expression in diazotrophic cyanobacteria in the Tropical North Atlantic in response to nutrient amendments. Frontiers in Aquatic Microbiology 3:386

Ulloa, O., Canfield, D.E., DeLong, E.F., Letelier, R.M., Stewart, F.J. 2012. Microbial oceanography of oxygen minimum zones. Proceedings of the National Academy of Sciences USA 109:15996-156003

Van Mooy, B.A.S., Hmelo, L.R., Soffen, L.E., Campangna, S.R., May, A.L., Dyhrman, S.T., Heithoff, A., Webb, E.A., Momper, L., Mincer, T.J. 2012. Quorum sensing control of phosphorus acquisition in Trichodesmium consortia. The ISME Journal 6:422-429

Varaljay, V.A., Gifford, S.M., Wilson, S.T., S. Sharma, Karl, D.M., Moran, M.A. 2012. Bacterial dimethylsulfoniopropionate-degrading genes in the oligotropic North Pacific Subtropical Gyre. Applied and Environmental Microbiology 78:2775-2782

Waldbauer, J.R., Rodrigue, S., Coleman, M.L., Chisholm, S.W. 2012. Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle. PLoS One 7:e43432-

White, A.E., Foster, R.A., Benitez-Nelson, C.R., Masqué, P., Verdeny, E., Popp, B.N. et al. 2012. Nitrogen fixation in the Gulf of California and the Eastern Tropical North Pacific. Progress in Oceanography 109:1-17.

Wilson, S.T., Bottjer, D., Church, M.J., Karl, D.M. 2012. Comparative assessment of nitrogen fixation methodologies conducted in the oligotrophic North Pacific Ocean. Applied and Environmental Microbiology 78:6516-6523

Wilson, S.T., Kolber, Z.S., Tozzi, S., Zehr, J.P., Karl, D.M. 2012. Nitrogen fixation, hydrogen cycling and electron transport kinetics in Trichodesmium erythraeum (Cyanobacteria) Strain IMS101. J. Phycology 48:595-606

Zeng, Q., Chisholm, S.W. 2012. Marine viruses exploit their host's two-component regulatory system in response to resource limitation.. Current Biology 22:124-128

2011

Anderson, L.A., McGillicuddy, D.J. Jr., Maltrud, M.E., Lima, I.D., Doney, S.C. 2011. Impact of eddy-wind interaction on eddy demographics and phytoplankton community structure in a model of the North Atlantic. Dynamics Atmos. Oceans 52:80-94

Bench, S.R., Ilikchyan, I.N., Tripp, H., James, H., Zehr, J.P. 2011. Two strains of Crocosphaera watsonii with highly conserved genomes are distinguished by strain-specific features. Frontiers in Microbiol. 2:261

Bienfang, P., DeFelice, S., Laws, E.A. 2011. Quantitative Environmental Benchmarking in a Hydrologically Driven Hawaiian Coastal System. Marine Technology Society Journal 45:88-100

Bombar, D., Moisander, P.H., Dippner, J.W., Foster, R.A., Voss, M., Karfeld, B., Zehr, J.P. 2011. Distribution of diazotrophic microorganisms and nifH gene expression in the Mekong River Plume during intermonsoon. Marine Ecology Progress Series 424:39-55

Brum, J.R., Steward, G.F. 2011. Evaluation of methods for physical fractionation of aquatic viral assemblages. Limnology and Oceanography Methods 9:150-163

Bruno, B. C., Tice, K. A., Puniwai, N., Achilles, K. 2011. Ocean acidification: hands-on experiments to explore the causes and consequences. Science Scope 34:23-30

Bruno, B.C., Wiener, C.W., Kimura, A., Kimura, R. 2011. Ocean FEST: Families Exploring Science Together. Journal of Geoscience Education 59:13-21

Bruno, B.C., Thomas, S.E., Frazier, M.M., James, L. 2011. Student perspectives on facilitating positive undergraduate research experiences. Council of Undergraduate Research Quarterly 32 (2):37-40

Brzezinski, M.A., Krause, J.W., Church, M.J., Karl, D.M., Li, B., Jones, J.L., Updyke, B. 2011. The annual silica cycle of the North Pacific subtropical gyre. Deep Sea Research I 58:988-1001

Calil, P.H.R., Doney, S.C., Yumimoto, K., Eguchi, K., Takemura, T. 2011. Episodic upwelling and dust deposition as bloom triggers in low nutrient low chlorophyll (LNLC) regions. J. Geophys. Res. Oceans 116:C06030-doi:10.1029/2010JC006704

Chisholm, S.W. 2011. Unveiling Prochlorococcus. Microbe 6:280-283

Culley, A.I. 2011. Virophages to viromes: a report from the frontier of viral oceanography. Current opinion in virology 1:52-57

Duhamel, S., Björkman, K.M., Van Wambeke, F., Moutin, T., Karl, D.M. 2011. Characterization of alkaline phosphatase activity in the North and South Pacific Subtropical Gyres: Implications for phosphorus cycling. Limnology and Oceanography 56:1244-1254

Eiler, A., Hayakawa, D. H., Rappé, M. S. 2011. Non-random assembly of bacterioplankton communities in the subtropical North Pacific Ocean. Frontiers in Aquatic Microbiology 2:140-140

Farnelid, H., Andersson, A.F., Bertilsson, S. Al-Soud, W.A., Hansen, L.H., Sorensen, S., Steward, G.F., Hagstrom, A., Riemann, L. 2011. Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria. PLoS ONE 6:e19223

Fawcett, S., Lomas, M., Casey, J., Ward, B., Sigman, D. 2011. Assimilation of upwelled nitrate by small eukaryotes in the Sargasso Sea. Nature Geoscience 4:1-6

Feely, R.A., Doney, S.C. 2011. Ocean acidification: the other CO2 problem. ASLO Limnology and Oceanography: e-Lectures website

Field D, Sansone S, DeLong E.F., Sterk P, Friedberg I, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O. 2010. Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB.. ISMB 3:232-234

Field D, Sansone S, DeLong E.F., Sterk P, Friedberg I, Gaudet P, Lewis S, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O, Bramlett B, Gregurick S, Lapp H, Orchard S, Rocca-Serra P, Ruttenberg A, Shah N, Taylor C, Thessen A. 2010. Meeting Report: BioSharing at ISMB. Stand Genomic Science. 3:3:254-258

Finzi, A.C., Cole, J.J., Doney, S.C., Holland, E.A., Jackson, R.B. 2011. Research frontiers in the analysis of coupled biogeochemical cycles. Frontiers Ecology and the Environment 9:74-80

Foster, R.A., Kuypers, M.M.M., Vagner, T., Paerl, R.W., Musat, N., Zehr, J.P. 2011. Nitrogen fixation and transfer in open ocean diatom-cyanobacterial symbioses. The ISME Journal 5:1484-1493

Glover, D.M., Jenkins, W.J., Doney, S.C. 2011. Modeling Methods for Marine Science. Cambridge University Press. 592 pp

Grote, J., et al. (including Y.M. Rii, M.J. Church, G.F. Steward, D.M. Karl, E.F. DeLong and M.S. Rappé) 2011. Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria. Stand. Genomic Sci. 5:269-278

Hamersley, M.R., Turk K.A., Leinweber A., Gruber N., Zehr J.P., Gunderson, T, Capone, D.G. 2011. Nitrogen fixation within the water column associated with two hypoxic basins within the Southern California Bight. Aquatic Microbial Ecology 63:19

Hayakawa, D. H., Huggett, M. J., Rappé, M. S. 2011. Ecology and cultivation of marine oligotrophic bacteria. In: Horikoshi, K., Antranikian, G., Bull, A. T., Robb, F., Stetter, K. Extremophiles Handbook. pp 1161-1178. Springer-Verlag

Hsia, M.H., Thomas, K.A., Bruno, B.C. 2011. What microbe are you? An activity designed for our youngest scientists. American Society for Microbiology Classroom and Outreach Activities (online) July 2011:1-11

John, S.G., Mendez, C.B., Deng, L., Poulos, B., Kauffman, A.K.M., Kern, S., Brum, J., Polz, M.F., Boyle, E.A. Sullivan, M.B. 2011. A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environmental Microbiology Reports 3:195-202

Johnsen, G., A. Bricaud, N. Nelson, B. B. Prézelin and R. R. Bidigare. 2011. In vivo bio-optical properties of phytoplankton pigments. In: Phytoplankton Pigments: Characterization, Chemotaxonomy and Applications in Oceanography. Cambridge Environmental Chemistry Series, Cambridge, pp. 496-537.

Jouandet, M.P., Trull, T.W., Guidi, L., Picheral, M., Ebersbach, F., Stemmann, L., Blain. S. 2011. Optical imaging of mesopelagic particles indicates deep carbon flux beneath a natural iron-fertilized bloom in the Southern Ocean. Limnology and Oceanography 56:1130-1140

Kelly, L., Huang, K.H., Ding, H., Chisholm, S.W. 2011. ProPortal: A resource for integrated systems biology of Prochlorococcus and its phage. Nucleic Acids Res 40:D632-D640

Kim, J.-M., Lee, K., Shin, K., Yang, E.J., Engel, A., Karl, D.M., Kim, H.-C. 2011. Shifts in biogenic carbon flow from particulate to dissolved forms under high carbon dioxide and warm ocean conditions. Geophysical Research Letters 38: L08612, doi:10.1029/2011GL047346

Kimura, H., Young, CR, Martinez, A., DeLong, E.F. 2011. Light induced transcriptional responses associated with proteorhodopsin enhanced growth in a marine flavobacterium. The ISME Journal 5:1641-1651

Landry, M. R., Selph, K.E, Taylor, A. G., Décima, M., Balch, W. M., Bidigare, R.R. 2011. Phytoplankton growth, grazing and production balances in the HNLC equatorial Pacific . Deep Sea Research II 58:524-535

Laws, E. A., Pei, S., Bienfang, P., Grant, S. 2011. Phosphate-limited growth and uptake kinetics of the marine prasinophyte Tetraselmis suecica (Kylin) Butcher. Aquaculture 323:117-121

Laws, E.A., Pei, S. F.,Bienfang, P., Grant, S., Sunda, W.G. 2011. Phosphate-limited growth of Pavlova lutheri (prymnesiophyceae) in continuous culture: determination of growth-rate-limiting substrate concentrations with a sensitive bioassay procedure. Journal of Phycology 47:1089-1097

Laws, E.A., D'Sa, E., Naik, P. 2011. Simple equations to estimate ratios of new or export production to total production from satellite-derived estimates of sea surface temperature and primary production. Limnology and Oceanography:Methods 9:593-601

Lee, J.-M., Boyle, E.A., Echegoyen-Sanz, Y. , Fitzsimmons, J.N., Zhang, R., Kayser, R.A. 2011. Analysis of trace metals (Cu, Cd, Pb, and Fe) in seawater using single batch Nitrilotriacetate resin extraction and isotope dilution inductively coupled plasma mass spectrometry. Analytica Chimica Acta 686:93-101

Li, B., Karl, D.M., Letelier, R.M., Church, M.J. 2011. Size-dependent photosynthetic variability in the North Pacific Subtropical Gyre. Marine Ecology Progress Series 440: 27-40.

Martinez, A., Osbourne, M., DeLong, E.F., Chisholm, S.W. 2011. Phosphite utilization by the marine picocyanobacterium Prochlorococcus marinus MIT9301. Environmental Microbiology 14:1363-1377

Mayer, B., Bruno, B.C. 2011. C-MORE and Science Buzz: Where students and scientists meet. The Earth Scientist 27 (4):27-30

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Misumi, K., Tsumune, D., Yoshida, Y., Uchimoto, K., Nakamura, T., Nishioka, J., Mitsudera, H. Bryan, F.O., Lindsay, K., Moore, J.K., Doney, S.C. 2011. Mechanisms controlling dissolved iron distribution in the North Pacific: A model study. J. Geophys. Res. Biogeosci 116:G03005-doi:10.1029/2010JG001541

Moisander P.H., Zhang, R., Boyle, E.A., Hewson, I., Montoya, J.P., Zehr, J.P. 2011. Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean. The ISME Journal 6:733-744

Osburne, M.S., Holmbeck, B.M., Coe, A., Chisholm, S.W. 2011. The spontaneous mutation frequency in the marine cyanobacterium is commensurate with that of other bacteria. Environmental Microbiology Reports 3:744-749

Ottesen, E.A., Marin III, R., Preston, C.M., Young, C.R., Ryan, J.P., Scholin, C.A., DeLong, E.F. 2011. Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. The ISME Journal 5:1881-1895

Paerl, R.W., Johnson, K.S., Welsh, R.M., Worden, A.Z., Chavez, F.P., Zehr, J.P. 2011. Differential distributions of Synechococcus subgroups across the California Current System. Frontiers in Microbolgy 2:59

Preston, C.M., Harris, A., Ryan, J.P., Roman, B.,, Marin III, R., Jensen, S., Everlove, C., Birch, J., Dzenitis, J.M., Pargett, D., Adachi, M., Turk, K., Zehr, J.P., Scholin, C.A. 2011. Underwater application of quantitative PCR on an ocean mooring. PLoS ONE 6(8): e22522. doi:10.1371/journal.pone.0022522

Quigg, A., Sylvan, J. B., Gustafson, A. B., Fisher, T. R., Tozzi, S., and J. W. Ammerman 2011. Going west: role of phosphorus limitation in expanding the primary production across the Louisiana shelf. Aquatic Geochemistry 17:519-544

Rich, V.R., Pham, V., Eppley, J., Shi, Y., DeLong, E.F. 2011. Time-series analyses of Monterey Bay coastal microbial picoplankton using a "genome proxy" microarray. Environmental Microbiology 13:116-134

Robidart, J.C, Preston, C.M., Paerl, R.W., Turk, K.A., Mosier, A.C., Francis, C.A., Scholin, C.A., Zehr, J.P. 2011. Seasonal dynamics of Synechococcus and Thaumarchaeal microbial populations in Monterey Bay resolved in real time with remote in situ instrumentation. The ISME Journal 6:513-523

Ryan, J., Greenfield, D., Marin III, R., Preston, C., Roman, B., Jensen, S., Pargett, D., Birch, J., Mikulski, C., Doucette, G., Scholin, C. 2011. Harmful phytoplankton ecology studies using an autonomous molecular analytical and ocean observing network. Limnology and Oceanography 56:1255-1272

Saito, M.A., Bertrand, E.M., Bulygin, V., Moran, D., Dutkiewicz, S., Monteiro, F.M., Follows, M.J., Valois, F.W., Waterbury, J.B. 2011. Iron Conservation by Reduction of Metalloenzyme Inventories in the Marine Diazotroph Crocosphaera watsonii. Proceedings of the National Academy of Sciences USA 108:2184-2189

Saito, M.A. , Bulygin, V., Moran, D. , Taylor, C., Scholin, C. 2011. Examination of Microbial Proteome Preservation Techniques Applicable to Autonomous Environmental Sample Collection. Frontiers in Aquatic Microbiology doi: 10.3389/fmicb.2011.00215:1-10

Salerno, J.L., Reineman, D.R., Gates, R.D., Rappé, M.S. 2011. The effect of a sub-lethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressa. Journal of Marine Biology doi:10.1155/2011/969173:.-.

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Scholin, C.2013. Ecogenomic Sensors. In: Levin S.A. (ed.) Encyclopedia of Biodiversity, second edition, Volume 2, pp. 690-700. Waltham, MA: Academic Press.

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Sher, D., Thompson, J.W., Kashtan, N., Croal, L., Chisholm, S.W. 2011. Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria. The ISME Journal 1:1-8

Shi, Y., Tyson, G. W, Eppley, J., DeLong. E.F. 2011. Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. The ISME Journal 5:999-1013

Smith Jr., W. O., Asper, V. A., Tozzi, S., Liu. X. 2011. Surface layer variability in the Ross Sea, Antarctica as assessed by in situ fluorescence measurements. Progress in Oceanography 88:28-45

Sohm, J. A., Hilton, J., Noble, A., Zehr, J.P., Saito, M.A., Webb, E.A. 2011. Nitrogen fixation in the South Atlantic Gyre and Benguela Upwelling System. Geophysical Research Letters 38:L16608

Steward, G.F., Preston, C.M. 2011. Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct cloning. Virology Journal 8:287

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Stewart, F., Sharma, A. Bryant, J., Eppley, J.M., DeLong, E.F. 2011 Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities, Genome Biology, 12:R26, doi:10.1186/gb-2011-12-3-r26

Swan, B. K, Martinez-Garcia, M., Preston, C. M., Sczyrba, A., Woyke, T., , Lamy, D., Reinthaler, T., Poulton,N. J., Masland, E. D. P. , Lluesma Gomez, M., Sieracki, M.E., DeLong, E. F., Herndl,G.J., Stepanauskas, R. 2011. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 333:1296-1300

Sylvan, J. B., Quigg, A., Tozzi, S., Ammerman, J.W. 2011. Mapping phytoplankton community physiology on a river impacted continental shelf: testing a multifaceted approach. Estuaries and Coasts 34:1220-1233

Talarmin A., Van Wambeke F., Duhamel S., Catala P., Moutin T., Lebaron P. 2011. Improved methodology to measure taxon-specific phosphate uptake in live and unfiltered samples. Limnology and Oceanography: Methods 9:443-453

Thomas, K.A., Bruno, B.C., Achilles, K., Sherman, S.B., 2011. A watery whodunit: the case of the missing zooxanthellae. Science Scope 34:44-54

Thompson, L.R., Zeng, Q., Kelly, L., Huang, K.H., Coleman, M.L., Singer, S.U., Stubbe, J., Chisholm, S. W. 2011. Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism. Proceedings of the National Academy of Sciences USA 108:E757-E764

Thompson, A.W., Huang, K., Saito, M.A., Chisholm, S.W. 2011. Transcriptome response of high- and low-light adapted Prochlorococcus strains to changing iron availability. The ISME Journal 49:1-15

Thrash, J. C., Boyd, A., Huggett, M. J., Grote, J., Carini, P., Yoder, R. J., Robbertse, B., Spatafora, J. W., Rappé, M. S., Giovannoni, S. J. 2011. Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade. Scientific Reports 1:13-13

Tripp, H. J., I. Hewson, S. Boyarsky, J. Stuart, and J. P. Zehr 2011. Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies. Nucleic Acids Research 39:8792

Viviani, D.A., Bjorkman, K.M., Karl, D.M., Church, M.J. 2011. Plankton metabolism in surface waters of the tropical and subtropical Pacific Ocean. Aquatic Microbial Ecology 62:1-12

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Ye, S. Y., Laws, E. A., Ding, X. G., Yuan, H. M., Zhao, G. M., Wang, J. 2011. Trace metals in porewater of surface sediments and their bioavailability in Jiaozhou Bay, Qingdao, China. Environmental Earth Sciences 64:1641-1646

Ye, S. Y., Laws, E. A., Zhong, S. J., Ding, X. G., Pang, S. J. 2011. Sequestration of metals through association with pyrite in subtidal sediments of the Nanpaishui Estuary on the Western Bank of the Bohai Sea, China. Marine Pollution Bulletin 62:934-941

Zehr, J.P. Kudela, R.M. 2011. Nitrogen cycle of the open ocean: from genes to ecosystems. Annual Review of Marine Science 3:197-225

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2010

Aller, J.Y., Aller, R.C., Kemp, P.F., Chistoserdov, A.Y., Madrid, V.M. 2010. Fluidized muds, a novel setting for the generation of biosphere diversity through geologic time. Geobiology 8:169-178

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Duhamel, S., Dyhrman, S.T., Karl, D.M. 2010. Alkaline phosphatase activity and regulation in the North Pacific Subtropical Gyre. Limnology and Oceanography 55:1414-1425

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Goebel, N.L., Turk, K.A., Achilles, K.M., Paerl, R.W., Hewson, I., Morrison, A. E., Montoya, J.P., Edwards, C.A., Zehr, J.P. 2010. Abundance and distribution of major groups of diazotrophic cyanobacteria and their potential contribution to N2 fixation in the tropical Atlantic Ocean. Environmental Microbiology 12:3272-3289

Goebel, N.L., Edwards, C.A., Zehr, J.P., Follows, M.J. 2010. An emergent community ecosystem model applied to the California Current System. Journal of Marine Systems 83:221-224

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Henson, S.A., Sarmiento, J.L., Dunne, J.P., Bopp, L., Lima, I., Doney, S.C., John, J., Beaulieu, C. 2010. Detection of anthropogenic climate change in satellite records of ocean chlorophyll and productivity. Biogeosciences 7:621-640

Hewson, I., Poretsky, R.S., Tripp, H.J., Montoya, J.P., Zehr, J.P. 2010. Spatial patterns and light-driven variation of microbial population gene expression in surface waters of the oligotrophic open ocean. Environmental Microbiology 12:1940-1956

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Karl, D.M. 2010. Oceanic ecosystem time-series programs: ten lessons learned. Oceanography 23:104-125

Lawrence, J.L., Steward, G.F. 2010. Purification of viruses by centrifugation in density gradients. In: Suttle C.A., Wilhelm S.W., Weinbauer, M.G. Methods in aquatic virus ecology. ASLO

Li, B., Sher, D., Kelly, L., Huang, K., Joewono, I., Rusch, D., Chisholm, S.W., van der Donk, W. A. 2010. Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria. Proceedings of the National Academy of Sciences USA 107:10430-10435

Liu, X., Zhang, Q., Murata, K., Baker, M.L., Sullivan, M.B., Fu, C., Schmid, M.F., Osburne, M.S., Chisholm, S.W., Chiu, W. 2010. Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus. Nature Structural and Molecular Biology 17:830-836

Luo, Y., Ducklow, H.W., Friedrichs, M.A.M., Doney, S.C., Church, M.J. 2010. Oceanic heterotrophic bacterial nutrition by semilabile DOM as revealed by data assimilative modeling. Aquatic Microbial Ecology 60:273-287

Moloney, C.L., St. John, M.A., Denman, K.L., Karl, D.M., Koster, F.W., Sundby, S. and Wilson, R.P. 2010. Weaving marine food webs from end-to-end under global change. Journal of Marine Systems 84:106-116

Marinov, I., Doney, S.C., Lima, I.D. 2010. Response of ocean phytoplankton community structure to climate change over the 21st century: partitioning the effects of nutrients, temperature and light. Biogeosciences 7:3941-3959

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McCarren, J., Becker, J.W., Repeta, D.J., Shi, Y., Young, C.R., Malmstrom, R.R. Chisholm, S.W.., DeLong, E.F. 2010. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proceedings of the National Academy of Sciences USA 107:16420-16427

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Orchard, E.D., Ammerman, J.W., Lomas, M.W., Dyhrman, S.T. 2010. Dissolved inorganic and organic phosphorus uptake in Trichodesmium and the microbial community: The importance of phosphorus ester in the Sargasso Sea. Limnology and Oceanography 55:1390-1399

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Pennebaker, K., Mackey, K., Smith, R.M., Williams, S.B., Zehr, J.P. 2010. Diel cycling of DNA-staining and nifH gene regulation in the unicellular cyanobacterium Crocosphaera watsonii Strain WH8501 (CYANOPHYTA). Environmental Microbiology 12:1001-1010

Picheral, M., Guidi, L., Stemmann, L., Karl, D., Iddaoud, G., Gorsky, G. 2010. The underwater Vision Profiler 5: An advanced instrument for high spatial resolution studies of particle size spectra and zooplankton. Limnology and Oceanography Methods 8:462-473

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Riemann, L., Farnelid, H., Steward, G.F. 2010. Nitrogenase genes in non-cyanobacterial plankton: prevalence, diversity, and regulation in marine waters. Aquatic Microbial Ecology 61:225-237

Rodrigue, S., Materna, A.C., Timberlake, S.C., Blackburn M.C., Malmstrom, R.R., Alm, E.J., Chisholm, S.W. 2010. Unlocking short read sequencing for metagenomics. PLoSONE 5:e11840-e11840

Saba, V.S., M.A.M. Friedrichs, M.-E. Carr, D. Antoine, R.A. Armstrong, I. Asanuma, O. Aumont, N.R. Bates, M.J. Behrenfeld, V. Bennington, L. Bopp, J. Bruggeman, E.T. Buitenhuis, M.J. Church, A.M. Ciotti, S.C. Doney, M. Dowell, J. Dunne, S. Dutkiewicz, W. Gregg, N. Hoepffner, K.J.W. Hyde, J. Ishizaka, T. Kameda, D.M. Karl, I. Lima, M.W. Lomas, J. Marra, G.A. McKinley, F. Mélin, J.K. Moore, A. Morel, J. O'Reilly, B. Salihoglu, M. Scardi, T.J. Smyth, S. Tang, J. Tjiputra, J. Uitz, M. Vichi, K. Waters, T.K. Westberry, and A. Yool 2010. Challenges of modeling depth-integrated marine primary productivity over multiple decades: A case study at BATS and HOT. Global Biogeochem. Cycles 24:GB3020-doi:10.1029/2009GB003655

Scholin, C. 2010. What are "ecogenomic sensors?" A review and thoughts for the future. Ocean Science 6:51-60

Shi, T., Ilikchyan, I., Rabouille, S., Zehr, J.P. 2010. Genome-wide analysis of diel gene expression in the unicellular N2-fixing cyanobacterium Crocosphaera watsonii WH 8501. The ISME Journal 4:621-632

Steglich, C. Futschik, M., Lindell, D., Rector, T., Steen, R., Chisholm, S.W. 2010. Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus. Genome Biology 11:R54

Steward, G.F., Culley, A.I. 2010. Extraction and purification of nucleic acids from viruses. In: Suttle C.A., Wilhelm S.W., Weinbauer, M.G. Methods in aquatic virus ecology. ASLO

Stewart, F.J., Ottesen E.A., DeLong, E.F. 2010. Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics. The ISME Journal 18:1-12

Sullivan, M.B., Huang, K.H., Ignacio-Espinoza, J.C., Berlin, A., Kelly, L., Weigele, P.R., DeFrancesco, A.S., Kern, S.E., Thompson, L.R., Young, S., Yandava, C., Fu1, R., Krastins, B., Chase, M., Sarracino, D., Osburne, M.S., Henn, M.R., Chisholm, S.W. 2010. Genomic analysis of oceanic cyanobacterial myoviruses compared to T4-like myoviruses from diverse hosts and environments. Environmental Microbiology 12:3035-3056

Tripp, H.J., Bench, S., Turk, K., Foster, R.A., Desany, B., Niazi, F., Affourtit, J. P., Zehr, J.P. 2010. Metabolic streamlining in an open ocean nitrogen-fixing cyanobacterium. Nature 464:90-94

Turk, K., Rees, A. P., Zehr, J. P., Pereira, N. A., Swift, P., Shelley, R., Lohan, M., Woodward, E. M. S., Gilbert, J. 2010. Nitrogen fixation and nitrogenase (nifH) expression in tropical waters of the eastern North Atlantic. The ISME Journal 7:1201-1212

Weersing, K., Padilla-Gamino, J., Bruno, B. 2010. What microbe are you? The Science Teacher 77:40-44

White, A. E., Karl, D. M., Bjorkman, K. M., Beversdorf, L.J., Letelier, R. M. 2010. Production of organic matter by Trichodesmium IMS101 as a function of phosphorus source. Limnology and Oceanography 55:1755-1767

White, A. E., Bjorkman, K., Grabowski, E., Letelier, R. M., Poulos, S., Watkins, B., Karl, D. M. 2010. An open ocean trial of controlled upwelling using wave pump technology. Journal of Atmospheric and Oceanic Technology 27:385-396

Wilson, S.T., Foster, R.A., Zehr, J.P., Karl, D.M. 2010. Hydrogen production by Trichodesmium, Cyanothece and Crocosphaera spp. Aquatic Microbial Ecology 59:197-206

Wilson S.T., Tozzi, S., Foster, R.A., Ilikchyan, I., Kolber, Z.S., Zehr, J.P., Karl, D.M. 2010. Hydrogen cycling by the unicellular marine diazotroph Crocosphaera watsonii strain WH8501. Applied and Environmental Microbiology 76:6797-6803

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Zehr, J.P. 2010. Nitrogen fixation by marine cyanobacteria. Trends Microbiology 19:162-173

2009

Apprill, A.M., Rappé, M.S. 2009. Response of the microbial community to coral spawning in lagoon and reef flat environments of Hawaii, USA. Aquatic Microbial Ecology 62:251-266

Bang, M, Chisholm, P. 2009. Living Sunlight: How plants bring life to the Earth (a children's book on Photosynthesis). Blue Sky Press, Scholastic. 43 pp

Bidigare, R.R., Chai, F., Landry, M.R., Lukas, R., Hannides, C.C.S., Christensen, S.C., Karl, D.M., Shi, L. and Chao, Y. 2009. Subtropical ocean ecosystem structure changes forced by North Pacific climate variations. J. Plankton Research 31:1131-1139

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Bragg. J., Dutkiewicz, S., Jahn, O., Follows, M.J., Chisholm, S.W. 2009. Modeling selective pressures on phytoplankton in the global ocean. PLoS ONE 5(3):e9569i

Church, M.J. 2009. The trophic tapestry of the sea. Proceedings of the National Academy of Sciences USA 106:15519-15520

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Culley A.I., Asuncion, B., Steward, G.F. 2009. Detection of inteins among diverse DNA polymerase genes of uncultivated members of the Phycodnaviridae. The ISME Journal 3: 409-413

DeLong, E.F. 2009. The microbial ocean from genomes to biomes. Nature 459:200-206

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Doney, S.C., Lima, I., Moore, J.K., Lindsay, K., Behrenfeld, M.J., Westberry, T.K., Mahowald, N., Glover, D.M., Takahashi, T. 2009. Skill metrics for confronting global upper ocean ecosystem-biogeochemistry models against field and remote sensing data. J. Marine Systems 76:95-112

Doucette, G.J., Mikulski, C.M., Jones K.L., King, K.L., Greenfield D.I., Marin III R., Jensen S., Roman B., Elliott C.T., Scholin, C.A. 2009. Remote, subsurface detection of the algal toxin domoic acid onboard the Environmental Sample Processor: assay development and initial field trials. Harmful Algae 8:880-888

Ducklow, H., Doney, S.C., Steinberg, D.K. 2009. Contributions of long-term research and time-series observations to marine ecology and biogeochemistry. Ann. Rev. Mar. Sci. 1:279-302

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2006

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