2009 Frias-Lopez, J. , Thompson, A. , Waldbauer, J. , and Chisholm, S. W. Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters. Environ. Microbiol. 11: 512-525.
2009 Hewson, I., R. W. Paerl, H. J. Tripp, J. P. Zehr and D. M. Karl. Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat. Limnology and Oceanography 54:1981-1994.
2009 Moore, R. M., S. Punshon, C. Mahaffey and D. Karl. The relationship between dissolved hydrogen and nitrogen fixation in ocean waters. Deep-Sea Research I 56: 1449-1458.
2010 Church, M. J., Wai, B., Karl, D. M. and E. F. DeLong. Distributions of crenarchaeal amoA genes and transcripts in the Pacific Ocean. Environmental Microbiology 12: 679-688.
2011 Viviani, D. A., Bjorkman, K. M., Karl, D. M., Church, M. J. Plankton metabolism in surface waters of the tropical and subtropical Pacific Ocean. Aquatic Microbial Ecology 62:1-12.
2013 Malmstrom, R. R., S. Rodrigue, K. H. Huang, L. Kelly, S. E. Kern, A. Thompson, S. Roggensack, P. M. Berube, M. R. Henn and S. W. Chisholm. Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. ISME Journal 7:184-198.
2008 Karl, D. M., Beversdorf, L., Bjorkman, K. M., Church, M. J., Martinez, A. and E. F. DeLong. Aerobic production of methane in the sea. Nature Geoscience 1:473-478.
2010 McCarren, J., Becker, J., D., Shi, Y., C. R. Young, Malmstrom, R. Chisholm P. and E. F. DeLong. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. PNAS 107:16420-16427.
2012 Guidi, L., Calil, P. H. R., Duhamel, S., Björkman, K. M., Doney, S. C., Jackson, G. A., Li, B., Church, M. J., Tozzi, S., Kolber, Z. S., Richards, K. J., Fong, A. A., Letelier, R. M., Gorsky, G., Stemmann, L., Karl, D. M. Does eddy-eddy interaction control surface phytoplankton distribution and carbon export in the North Pacific Subtropical Gyre?. J. Geophys. Res. Biogeosci. 117:G02024 -doi:10.1029/2012JG001984.
2013 Martinez A., Ventouras L. A., Wilson S. T., Karl, D. M. and E. F. DeLong. Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria. Front Microbiol. 4:340-doi: 10.3389/fmicb.2013.00340.
2016 Bryant, J. A., T. M. Clemente, D. A. Viviani, A. A. Fong, K. A. Thomas, P. Kemp, D. M. Karl, A. E. White and E. F. DeLong. Diversity and activity of communities inhabiting plastic debris in the North Pacific Gyre. mSystems 1(3): e00024-16.doi:10.1128/mSystems.00024-16.
2013 Sharma A. K., Becker J. W., Ottesen E. A., Bryant J. A., Duhamel S., Karl D. M., Cordero O. X., Repeta D. J., Delong E.F. Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade. Environ Microbiol. doi: 10.1111/1462-2920.12254:x-y
2012 Duhamel, S., Björkman, K. M., Karl, D. M. Light dependence of phosphorus uptake by microorganisms in the North and South Pacific subtropical gyres. Aquatic Microbial Ecology 67:225-238.
2013 Boiteau, R. M., Fitzsimmons, J. N., Repeta, D. J., and E. A. Boyle. Detection of iron ligands in seawater and marine cyanobacteria cultures by High-Performance Liquid Chromatography-Inductively Coupled Plasma-Mass Spectrometry. Analytical Chemistry 85: 4357-4362.
2016 Rii, Y. M., Duhamel, S., Bidigare, R. R., Karl, D. M., Repeta, D. J. and Church, M. J. Diversity and productivity of photosynthetic picoeukaryotes in biogeochemically distinct regions of the South East Pacific Ocean. Limnol. Oceanogr.. doi:10.1002/lno.10255.
Fitzsimmons, J. N., E. A. Boyle, and W. J. Jenkins. Distal transport of hydrothermal iron in the deep South Pacific Ocean. Proceedings of the National Academy of Sciences U.S.A., in review.
2017 Duhamel, S., K. M. Björkman, D. J. Repeta and D. M. Karl. Phosphorus dynamics in biogeochemically distinct regions of the southeast subtropical Pacific Ocean. Progress in Oceanography, 151: 261-274.
2013 Bombar, D., Turk-Kubo K. A., Robidart J., Carter B. J., and J. P. Zehr. Non-cyanobacterial nifH phylotypes in the North Pacific Subtropical Gyre detected by flow-cytometry cell sorting. Environmental Microbiology Reports 5:705-715.
2013 Wilson, S. T., D. A. del Valle, J. C. Robidart, J. P. Zehr and D. M. Karl. Dissolved hydrogen and nitrogen fixation in the oligotrophic North Pacific Subtropical Gyre. Environmental Microbiology Reports 5:697-704.
2014 Lincoln, S. A., Wai, B., Eppley, J. M., Church, M. J., Summons, R. E., and E. F. DeLong. Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean. Proceedings of the National Academy of Sciences U.S.A. 111:9858-9863.
2014 Ottesen, E. A., Young, C. R., Gifford, S. M., Eppley, J. M., Marin III, R., Schuster, S. C., Scholin, C. A. and E. F. DeLong. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages. Science 345:207-212.
2014 Robidart, J. C., M. J. Church, J. P. Ryan, F. Ascani, S. T. Wilson, D. Bonbar, R. Marin III, K. J. Richards, D. M. Karl, C. A. Scholin and J. P. Zehr. Ecogenomic sensor reveals controls on N2-fixing microorganisms in the North Pacific Ocean. ISME Journal 8:1-11.
2014 Wilson, S. T., D. A. del Valle, M. Segura-Noguera and D. M. Karl. A role for nitrite in the production of nitrous oxide in the lower euphotic zone of the oligotrophic North Pacific Ocean. Deep-Sea Research Part I 85:47-55.
2015 Aylward, F. O., J. M. Eppley, J. M. Smith, F. P. Chavez, C. A. Scholin, and E. F. DeLong. Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences U.S.A. 112: 5443-5448.
2015 Bombar, D., C. Taylor, S. T. Wilson, J. Robidart, A. Rabines, K. Turk-Kubo, J. N. Kemp, D. M. Karl, J. P. Zehr. Measurements of nitrogen fixation in the oligotrophic North Pacific Subtropical Gyre using a free-drifting Submersible Incubation Device. Journal of Plankton Research, 37:727-739.
2015 Bench, S. R., I. Frank, J. Robidart, J. P. Zehr. Two subpopulations of Crocosphaera watsonii have distinct distributions in the North and South Pacific. Environmental Microbiology doi: 10.1111/1462-2920.13180.
2016 Shilova, I., J. Robidart, E. DeLong, J. Zehr. Genetic diversity affects the daily transcriptional oscillations of marine microbial populations. PLoS ONE 11(1): e0146706
2014 Bidigare, R., F. Buttler, S. Christensen, B. Barone, D. Karl and S. Wilson. Evaluation of the utility of xanthophyll cycle pigment dynamics for assessing upper ocean mixing processes at Station ALOHA. J Plankton Res. 36: 1423-1433.
2014 Fitzsimmons, J.N. and E.A. Boyle. Assessment and comparison of Anopore and cross flow filtration methods for the determination of dissolved iron size fractionation I too soluble and colloidal phases in seawater. Limnology and Oceanography Methods, 12: 244-261.
2014 Gradoville, M. R., White, A. E., Böttjer, D., Church, M. J., and R. M. Letelier. Diversity trumps acidification: No carbon dioxide enhancement of Trichodesmium community nitrogen or carbon fixation at Station ALOHA. Limnology and Oceanography 59: 645-659.
2015 Alexander, H., M. Rouco, S. T. Haley, S. T. Wilson, D. M. Karl and S. T. Dyhrman. Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean. Proceedings of the National Academy of Sciences USA, 112: E5972-E5979, doi: 10.1073/pnas.1518165112.
2015 Barone, B., Bidigare, R. R., Church, M. J., Karl, D. M., Letelier, R. M. and White, A. E. Particle distributions and dynamics in the euphotic zone of the North Pacific Subtropical Gyre. Journal of Geophysical Research - Oceans, 120(5): 3229-3247, doi: 10.1002/2015JC010774.
2015 del Valle D. A., S. Martinez-Garcia, S. A. Sanudo-Wilhelmy, R. P. Kiene and D. M. Karl. Methionine and dimethylsulfoniopropionate as sources of sulfur to the microbial community of the North Pacific Subtropical Gyre. Aquatic Microbial Ecology, 75: 103-116.
2015 Fitzsimmons J., C. T. Hayes, S. al-Subiai, R. Zhang, P. Morton, R. Weisend, F. Ascani and E. A. Boyle. Daily to decadal variability of size-fractionated iron and iron-binding ligands at the Hawaii Ocean Time-series Station ALOHA. Geochimica et Cosmochimica Acta, doi: http://dx.doi.org/10.1016/j.gca.2015.08.012.
2015 Fontanez, K. M., J. M. Eppley, T. J. Samo, D. M. Karl, E. F. DeLong. Microbes and metabolic pathways on sinking particles in the North Pacific Subtropical Gyre. Frontiers in Microbiology, 6, doi:10.3389/fmicb.2015.00469.
2015 Hayes, C. T., J. N. Fitzsimmons, E. A. Boyle, D. McGee, R. F. Anderson, R. Weisend, and P. L. Morton. Thorium isotopes tracing the iron cycle at the Hawaii Ocean Time-series Station ALOHA. Geochimica et Cosmochimica Acta, 169, 1-16.
2015 Nicholson D., S. T. Wilson, S. C. Doney and D. M. Karl. Quantifying productivity in an oligotrophic gyre from autonomous observation of diel oxygen cycles. Geophysical Research Letters, 42: doi:10.1002/2015GL063065.
2015 Wilson, S. T., B. Barone, F. Ascani, R. R. Bidigare, M. J. Church, D. A. del Valle, S. T. Dyhrman, S. Ferrón, J. N. Fitzsimmons, L. W. Juranek, Z. S. Kolber, R. M. Letelier, S. Martínez-Garcia, D. Nicholson, K. J. Richards, Y. M. Rii, M. Rouco, D. A. Viviani, A. E. White, J. P. Zehr and D. M. Karl. Short-term variability in euphotic zone biogeochemistry and primary productivity at Station ALOHA: A case study of summer 2012. Global Biogeochemical Cycles, 29, doi:10.1002/2015GB005141.
2016 Fröllje, H., Pahnke, K., Schnetger, B., Brumsack, H-J., Dulai, H., Fitzsimmons, J.N. Hawaiian imprint on dissolved Nd and Ra isotopes and rare earth elements in the central North Pacific: local survey and seasonal variability. Geochimica et Cosmochimica Acta doi: http://dx.doi.org/10.1016/j.gca.2016.06.001
2016 Rouco, M., S. T. Haley, H. Alexander, S. T. Wilson, D. M. Karl, S. T. Dyhrman. Variable depth distribution of Trichodesmium clades in the North Pacific Ocean. Environmental Microbiology Reports, 8: 1058-1066.
2017 White, A. E., B. Barone, R. M. Letelier and D. M. Karl. Productivity diagnosed from the diel cycle of particulate carbon in the North Pacific Subtropical Gyre. Geophysical Research Letters, 44: 3752-3760, doi: 10.1002/2016GL071607.
2014 Del Valle, D. A. and D. M. Karl. Aerobic production of methane from dissolved water-column methylphosphonate and sinking particles in the North Pacific Subtropical Gyre. Aquatic Microbial Ecology, 73: 93-105.
2015 Diaz, J. M., K. M. Björkman, S. T. Haley, E. D. Ingall, D. M. Karl, A. F. Longo, S.T. Dyhrman. Polyphosphate dynamics at Station ALOHA, North Pacific Subtropical Gyre. Limnology and Oceanography, 61:227-239, doi: 10.1002/lno.10206.
2015 Casey, J. R., P. G. Falkowski and D. M. Karl. Substrate selection for heterotrophic bacterial growth in the sea. Marine Chemistry, doi: 1016/j.marchem.2015.06.032.
2015 Ferrón, S., S. T. Wilson, S. Martinez-Garcia, P. D. Quay and D. M. Karl. Metabolic balance in the mixed layer of the oligotrophic North Pacific Ocean from diel changes in oxygen:argon saturation ratios. Geophysical Research Letters, 42: doi:10.1002/2015GL063555.
2016 Ferrón, S., D. A. del Valle, K. M. Björkman, P. D. Quay, M. J. Church, and D. M. Karl. Application of membrane inlet mass spectrometry to measure aquatic gross primary production by the 18O in vitro method. Limnology and Oceanography Methods, 14: 610-622. doi:10.1002/lom3.10116.
2017 Aylward, F.O., Boeuf D., Mende D.R., Wood-Charlson E.M., Vislova A., Eppley J.M., Romano A.E. and DeLong, E.F. Diel cycling and long-term persistence of viruses in the ocean’s euphotic zone. PNAS USA 114: 11446-114451. doi: 10.1073/pnas.1714821114.
2017 Casey J.R., Ferrón S and Karl D.M. Light-enhanced microbial organic carbon yield. Front. Microbiol. 8:2157. doi: 10.3389/fmicb.2017.02157.
2017 White A.E., Barone B., Letelier R.M. and Karl D.M. Productivity diagnosed from the diurnal cycle of particulate carbon in the North Pacific Subtropical Gyre. Geophys Res Lett. 44(8):3752-3760. doi:10.1002/2016GL071607.
2017 Wilson S.T., Aylward F.O., Ribalet F., Barone B., Casey J.R., Connell P.E., Eppley J.M., Ferrón S., Romano A.E., Turk-Kubo K.A., Vislova A., Armbrust E.V., Caron D.A., Church M.J., Zeh J.P., Karl D.M. and DeLong E.F. Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera. Nature Microbiol. 2:17118. doi:10.1038/nmicrobiol.2017.118.
2018 Boysen A.K., Heal K.R., Carlson L.T. and Ingalls A.E. Best-matched internal standard normalization in liquid chromatography–mass spectrometry metabolomics applied to environmental samples. Analytical Chemistry, 90, pp.1363-1369.
2018 Bundy R.M., Boiteau R.M., McLean C., Turk-Kubo K.A., McIlvin M.R., Saito M.A., Van Mooy B.A.S, Repeta D.J. Distinct siderophores contribute to iron cycling in the mesopelagic at Station ALOHA. Front Mar Sci. 5:61 .
2018 Follett C.L., White A.E., Wilson S.T. and Follows M.J. Nitrogen fixation rates diagnosed from diurnal changes in elemental stoichiometry. Limnology and Oceanography, doi: 10.1002/lno.10815, in press.
2018 Frischkorn, K.R., Haley, S.T. and Dyhrman, S.T. Coordinated gene expression between Trichodesmium and its microbiome over day–night cycles in the North Pacific Subtropical Gyre. The ISME Journal 12, 997–1007.
Harke, M. J., Frischkorn, K.R., Haley, S.T., Aylward, F.O., Zehr, J.P., Dyhrman, S.T. Periodic and coordinated gene expression between a diazotroph and its diatom host. ISME Journal. In revision