2014-03-25 16:51:05,064 INFO     quick_adcp   importing numpy
2014-03-25 16:51:05,099 INFO     quick_adcp   importing matplotlib
2014-03-25 16:51:05,359 INFO     quick_adcp   =====================================================
2014-03-25 16:51:05,359 INFO     quick_adcp   =====================================================
2014-03-25 16:51:05,359 INFO     quick_adcp   command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d os38nb
2014-03-25 16:51:05,360 INFO     quick_adcp   cwd is /home/data/km1409/proc/os38nb
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2014-03-25 16:51:05,732 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:05,732 INFO     quick_adcp   step 1: set up files in "edit" directory 

2014-03-25 16:51:05,733 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:05,733 INFO     quick_adcp   step 2: scan files for time range

2014-03-25 16:51:06,239 INFO     quick_adcp   looking for database with adcpdb/a_km*.blk
2014-03-25 16:51:06,240 INFO     quick_adcp   database found: listing blocks
2014-03-25 16:51:06,281 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:06,282 INFO     quick_adcp   step 3: generate averaged data...
2014-03-25 16:51:06,381 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:06,381 INFO     quick_adcp   step 4: load averaged data (to database)
2014-03-25 16:51:06,666 INFO     quick_adcp   database time range:
2014-03-25 16:51:06,666 INFO     quick_adcp   2014/03/11  17:53:45 to 2014/03/25  16:48:48
2014-03-25 16:51:06,666 INFO     quick_adcp   (69.745660 to 83.700556)
2014-03-25 16:51:06,703 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:06,704 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2014-03-25 16:51:06,704 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:06,704 INFO     quick_adcp   step 6: run setflags?

2014-03-25 16:51:06,872 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:06,873 INFO     quick_adcp   step 7: get navigation

2014-03-25 16:51:09,504 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:09,504 INFO     quick_adcp   step 8: list heading

2014-03-25 16:51:09,555 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:09,556 INFO     quick_adcp   step 9: plot heading correction

2014-03-25 16:51:11,596 INFO     quick_adcp   
-------------------------
2014-03-25 16:51:11,596 INFO     quick_adcp   ---- running navsteps ---
2014-03-25 16:51:11,596 INFO     quick_adcp   -------------------------
2014-03-25 16:51:11,596 INFO     quick_adcp   step 10: nav steps: run adcpsect
2014-03-25 16:51:11,597 INFO     quick_adcp   navstep 1
2014-03-25 16:51:11,712 INFO     quick_adcp   -------------------------
2014-03-25 16:51:11,712 INFO     quick_adcp   step 11: nav steps: run refabs
2014-03-25 16:51:11,713 INFO     quick_adcp   navstep 2
2014-03-25 16:51:11,790 INFO     quick_adcp   -------------------------
2014-03-25 16:51:11,791 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2014-03-25 16:51:11,791 INFO     quick_adcp   navstep 3
2014-03-25 16:51:12,117 INFO     quick_adcp   -------------------------
2014-03-25 16:51:12,117 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2014-03-25 16:51:12,117 INFO     quick_adcp   navstep 4
2014-03-25 16:51:12,737 INFO     quick_adcp   -------------------------
2014-03-25 16:51:12,737 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2014-03-25 16:51:12,737 INFO     quick_adcp   navstep 5
2014-03-25 16:51:13,933 INFO     quick_adcp   -------------------------
2014-03-25 16:51:13,934 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2014-03-25 16:51:13,934 INFO     quick_adcp   navstep 6
2014-03-25 16:51:16,196 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:16,197 INFO     quick_adcp   step 10: find profile flags 

2014-03-25 16:51:16,529 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:16,530 INFO     quick_adcp   step 11: apply editing 

2014-03-25 16:51:16,643 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:16,643 INFO     quick_adcp   step 12: run calibration steps 

2014-03-25 16:51:19,558 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:19,558 INFO     quick_adcp   step 13: extract and plot temperature 

2014-03-25 16:51:20,398 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:20,398 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2014-03-25 16:51:20,944 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:20,945 INFO     quick_adcp   step 15: extract matlab "allbins" 

2014-03-25 16:51:22,601 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:51:22,601 INFO     quick_adcp   writing "cruise_info.txt"