2014-03-25 16:50:14,031 INFO     quick_adcp   importing numpy
2014-03-25 16:50:14,078 INFO     quick_adcp   importing matplotlib
2014-03-25 16:50:14,346 INFO     quick_adcp   =====================================================
2014-03-25 16:50:14,347 INFO     quick_adcp   =====================================================
2014-03-25 16:50:14,347 INFO     quick_adcp   command line was: /home/currents/programs/uhdas/scripts/run_quick.py -d os38bb
2014-03-25 16:50:14,347 INFO     quick_adcp   cwd is /home/data/km1409/proc/os38bb
about to run these steps:
 - write_clearflags
 - scandata
 - avg_and_load
 - codaseditsetup
 - setflags
 - getnav
 - lst_hdg
 - plot_headcorr
 - navsteps
 - find_pflags
 - apply_edit
 - navsteps
 - lst_temp
 - plot_temp
 - lst_npings
 - calib
 - matfiles
 - adcpsect
 - refabs
 - smoothnav
 - putnav
 - refplots
 - find_pflags
 - codaseditsetup
2014-03-25 16:50:14,789 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:14,789 INFO     quick_adcp   step 1: set up files in "edit" directory 

2014-03-25 16:50:14,813 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:14,813 INFO     quick_adcp   step 2: scan files for time range

2014-03-25 16:50:18,818 INFO     quick_adcp   looking for database with adcpdb/a_km*.blk
2014-03-25 16:50:18,819 INFO     quick_adcp   database found: listing blocks
2014-03-25 16:50:18,860 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:18,860 INFO     quick_adcp   step 3: generate averaged data...
2014-03-25 16:50:18,973 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:18,973 INFO     quick_adcp   step 4: load averaged data (to database)
2014-03-25 16:50:19,458 INFO     quick_adcp   database time range:
2014-03-25 16:50:19,459 INFO     quick_adcp   2014/03/11  17:53:45 to 2014/03/25  16:48:48
2014-03-25 16:50:19,459 INFO     quick_adcp   (69.745660 to 83.700556)
2014-03-25 16:50:19,510 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:19,510 INFO     quick_adcp   step 5: set up files for codas editing (gautoedit.py)

2014-03-25 16:50:19,511 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:19,511 INFO     quick_adcp   step 6: run setflags?

2014-03-25 16:50:19,617 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:19,617 INFO     quick_adcp   step 7: get navigation

2014-03-25 16:50:21,895 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:21,895 INFO     quick_adcp   step 8: list heading

2014-03-25 16:50:21,967 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:21,967 INFO     quick_adcp   step 9: plot heading correction

2014-03-25 16:50:24,632 INFO     quick_adcp   
-------------------------
2014-03-25 16:50:24,632 INFO     quick_adcp   ---- running navsteps ---
2014-03-25 16:50:24,632 INFO     quick_adcp   -------------------------
2014-03-25 16:50:24,632 INFO     quick_adcp   step 10: nav steps: run adcpsect
2014-03-25 16:50:24,632 INFO     quick_adcp   navstep 1
2014-03-25 16:50:24,784 INFO     quick_adcp   -------------------------
2014-03-25 16:50:24,785 INFO     quick_adcp   step 11: nav steps: run refabs
2014-03-25 16:50:24,785 INFO     quick_adcp   navstep 2
2014-03-25 16:50:24,874 INFO     quick_adcp   -------------------------
2014-03-25 16:50:24,874 INFO     quick_adcp   step 12: nav steps: run smoothr for plots
2014-03-25 16:50:24,875 INFO     quick_adcp   navstep 3
2014-03-25 16:50:25,199 INFO     quick_adcp   -------------------------
2014-03-25 16:50:25,199 INFO     quick_adcp   step 13: nav steps: smooth navigation for velocities
2014-03-25 16:50:25,199 INFO     quick_adcp   navstep 4
2014-03-25 16:50:25,935 INFO     quick_adcp   -------------------------
2014-03-25 16:50:25,935 INFO     quick_adcp   step 14: nav steps: put positions and uvship from refsm into codasdb 
2014-03-25 16:50:25,935 INFO     quick_adcp   navstep 5
2014-03-25 16:50:27,127 INFO     quick_adcp   -------------------------
2014-03-25 16:50:27,127 INFO     quick_adcp   step 15: nav steps: make reflayer plots
2014-03-25 16:50:27,128 INFO     quick_adcp   navstep 6
2014-03-25 16:50:29,592 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:29,593 INFO     quick_adcp   step 10: find profile flags 

2014-03-25 16:50:30,002 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:30,002 INFO     quick_adcp   step 11: apply editing 

2014-03-25 16:50:30,160 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:30,160 INFO     quick_adcp   step 12: run calibration steps 

2014-03-25 16:50:32,953 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:32,953 INFO     quick_adcp   step 13: extract and plot temperature 

2014-03-25 16:50:34,105 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:34,105 INFO     quick_adcp   step 14: extract and plot number of pings per ensemble 

2014-03-25 16:50:34,696 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:34,697 INFO     quick_adcp   step 15: extract matlab "allbins" 

2014-03-25 16:50:36,476 INFO     quick_adcp   ---------------------------------------------
2014-03-25 16:50:36,476 INFO     quick_adcp   writing "cruise_info.txt"